3D structure

PDB id
5ME1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GUUAAUACC
Length
9 nucleotides
Bulged bases
5ME1|1|A|U|467
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5ME1_012 not in the Motif Atlas
Homologous match to HL_5J7L_012
Geometric discrepancy: 0.1328
The information below is about HL_5J7L_012
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

5ME1|1|A|G|462
5ME1|1|A|U|463
5ME1|1|A|U|464
5ME1|1|A|A|465
5ME1|1|A|A|466
5ME1|1|A|U|467
5ME1|1|A|A|468
5ME1|1|A|C|469
5ME1|1|A|C|470

Current chains

Chain A
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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