5ME1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5ME1_001 | No text annotation | ||
| HL_5ME1_002 | No text annotation | ||
| HL_5ME1_003 | GNRA | ||
| HL_5ME1_004 | GNRA | ||
| HL_5ME1_036 | No text annotation | ||
| HL_5ME1_005 | No text annotation | ||
| HL_5ME1_006 | GNRA related | ||
| HL_5ME1_007 | GNRA | ||
| HL_5ME1_008 | No text annotation | ||
| HL_5ME1_009 | UNCG | ||
| HL_5ME1_010 | GNRA | ||
| HL_5ME1_011 | UNCG | ||
| HL_5ME1_012 | GNRA wlth extra near cWW | ||
| HL_5ME1_013 | No text annotation | ||
| HL_5ME1_037 | GNRA variation | ||
| HL_5ME1_014 | GNRA-like with tWH | ||
| HL_5ME1_015 | No text annotation | ||
| HL_5ME1_016 | GNRA | ||
| HL_5ME1_017 | No text annotation | ||
| HL_5ME1_018 | No text annotation | ||
| HL_5ME1_039 | No text annotation | ||
| HL_5ME1_019 | GNRA | ||
| HL_5ME1_020 | GNRA | ||
| HL_5ME1_021 | No text annotation | ||
| HL_5ME1_038 | No text annotation | ||
| HL_5ME1_022 | No text annotation | ||
| HL_5ME1_023 | No text annotation | ||
| HL_5ME1_024 | GNRA | ||
| HL_5ME1_025 | T-loop related | ||
| HL_5ME1_026 | No text annotation | ||
| HL_5ME1_027 | GNRA | ||
| HL_5ME1_028 | GNRA | ||
| HL_5ME1_029 | T-loop with 3 stacked bulged bases | ||
| HL_5ME1_030 | No text annotation | ||
| HL_5ME1_031 | UNCG | ||
| HL_5ME1_032 | GNRA | ||
| HL_5ME1_033 | No text annotation | ||
| HL_5ME1_034 | tRNA anticodon loop | ||
| HL_5ME1_035 | No text annotation | ||
| HL_5ME1_040 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5ME1_001 | Single bulged G | ||
| IL_5ME1_002 | Single bulged A | ||
| IL_5ME1_003 | No text annotation | ||
| IL_5ME1_004 | Minor groove platform | ||
| IL_5ME1_005 | Multiple bulged bases | ||
| IL_5ME1_006 | Minor groove platform with extra cWW | ||
| IL_5ME1_007 | Minor groove platform | ||
| IL_5ME1_064 | Single bulged G | ||
| IL_5ME1_008 | Single bulged G, near cWW | ||
| IL_5ME1_009 | Isolated non-canonical cWW pair | ||
| IL_5ME1_010 | Minor groove platform related | ||
| IL_5ME1_011 | Isolated cWH basepair | ||
| IL_5ME1_012 | tWH-tWH-tHW-tHW | ||
| IL_5ME1_013 | No text annotation | ||
| IL_5ME1_014 | Kink-turn with non-sequential stacking | ||
| IL_5ME1_015 | No text annotation | ||
| IL_5ME1_016 | C-loop | ||
| IL_5ME1_017 | Single bulged U | ||
| IL_5ME1_018 | C-loop | ||
| IL_5ME1_019 | Single bulged G | ||
| IL_5ME1_020 | No text annotation | ||
| IL_5ME1_021 | No text annotation | ||
| IL_5ME1_022 | tSH-tHW-tWW | ||
| IL_5ME1_023 | No text annotation | ||
| IL_5ME1_024 | SSU/LSU pseudoknot | ||
| IL_5ME1_025 | Kink-turn related | ||
| IL_5ME1_026 | No text annotation | ||
| IL_5ME1_027 | tSH-tHW-tHS | ||
| IL_5ME1_028 | Major groove platform | ||
| IL_5ME1_029 | Major groove minor groove platform; mini C-loop | ||
| IL_5ME1_030 | No text annotation | ||
| IL_5ME1_031 | Major groove platform; stack outside cWW | ||
| IL_5ME1_032 | Single stack bend | ||
| IL_5ME1_033 | Tandem non-canonical cWW pairs | ||
| IL_5ME1_069 | Triple non-canonical cWW pairs | ||
| IL_5ME1_034 | Kink-turn | ||
| IL_5ME1_035 | Left turn | ||
| IL_5ME1_036 | tSH-tHW-tHS | ||
| IL_5ME1_037 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5ME1_038 | Single bulged A | ||
| IL_5ME1_039 | No text annotation | ||
| IL_5ME1_040 | Minor groove platform | ||
| IL_5ME1_041 | Minor groove platform | ||
| IL_5ME1_042 | Minor groove platform | ||
| IL_5ME1_043 | Single stack bend | ||
| IL_5ME1_065 | No text annotation | ||
| IL_5ME1_044 | Single bulged U | ||
| IL_5ME1_045 | No text annotation | ||
| IL_5ME1_066 | Isolated cWS basepair | ||
| IL_5ME1_046 | Minor groove platform | ||
| IL_5ME1_047 | Single bulged A | ||
| IL_5ME1_048 | Isolated non-canonical cWW pair | ||
| IL_5ME1_049 | No text annotation | ||
| IL_5ME1_050 | Minor groove platform | ||
| IL_5ME1_051 | No text annotation | ||
| IL_5ME1_052 | No text annotation | ||
| IL_5ME1_053 | 180 degree turn | ||
| IL_5ME1_054 | Double sheared with non-canonical cWW | ||
| IL_5ME1_055 | No text annotation | ||
| IL_5ME1_056 | No text annotation | ||
| IL_5ME1_057 | No text annotation | ||
| IL_5ME1_067 | Isolated non-canonical cWW pair | ||
| IL_5ME1_058 | No text annotation | ||
| IL_5ME1_068 | No text annotation | ||
| IL_5ME1_059 | Isolated non-canonical cWW pair | ||
| IL_5ME1_060 | Double sheared | ||
| IL_5ME1_061 | Triple sheared related | ||
| IL_5ME1_062 | Single bulged A | ||
| IL_5ME1_063 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5ME1_001 | No text annotation | ||
| J3_5ME1_012 | No text annotation | ||
| J3_5ME1_002 | No text annotation | ||
| J3_5ME1_013 | No text annotation | ||
| J3_5ME1_017 | No text annotation | ||
| J3_5ME1_014 | No text annotation | ||
| J3_5ME1_003 | No text annotation | ||
| J3_5ME1_004 | No text annotation | ||
| J3_5ME1_005 | No text annotation | ||
| J3_5ME1_006 | No text annotation | ||
| J3_5ME1_007 | No text annotation | ||
| J3_5ME1_015 | No text annotation | ||
| J3_5ME1_008 | No text annotation | ||
| J3_5ME1_009 | No text annotation | ||
| J3_5ME1_010 | No text annotation | ||
| J3_5ME1_016 | No text annotation | ||
| J3_5ME1_011 | No text annotation | ||
| J4_5ME1_001 | No text annotation | ||
| J4_5ME1_002 | No text annotation | ||
| J4_5ME1_003 | No text annotation | ||
| J4_5ME1_004 | tRNA junction | ||
| J5_5ME1_001 | No text annotation | ||
| J5_5ME1_002 | No text annotation | ||
| J5_5ME1_003 | No text annotation |
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