HL_5ME1_018

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

5ME1|1|A|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ME1_018 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2617

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5ME1|1|A|C|839
5ME1|1|A|C|840
5ME1|1|A|C|841
5ME1|1|A|U|842
5ME1|1|A|U|843
5ME1|1|A|G|844
5ME1|1|A|A|845
5ME1|1|A|G|846
5ME1|1|A|G|847

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain R

30S ribosomal protein S18