HL_5ME1_032

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

5ME1|1|A|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ME1_032 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.0958

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5ME1|1|A|G|1515
5ME1|1|A|2MG|1516
5ME1|1|A|G|1517
5ME1|1|A|MA6|1518
5ME1|1|A|MA6|1519
5ME1|1|A|C|1520

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Z

Translation initiation factor IF-3