HL_5ME1_040
3D structure
- PDB id
- 5ME1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ME1_040 not in the Motif Atlas
- Homologous match to HL_1FIR_003
- Geometric discrepancy: 0.5286
- The information below is about HL_1FIR_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5ME1|1|X|G|53
5ME1|1|X|5MU|54
5ME1|1|X|PSU|55
5ME1|1|X|C|56
5ME1|1|X|A|57
5ME1|1|X|A|58
5ME1|1|X|A|59
5ME1|1|X|U|60
5ME1|1|X|C|61
Current chains
- Chain X
- fMet-tRNA
Nearby chains
- Chain Y
- Translation initiation factor IF-3
Coloring options: