HL_5MEI_016
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_016 not in the Motif Atlas
- Homologous match to HL_8C3A_016
- Geometric discrepancy: 0.0722
- The information below is about HL_8C3A_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
5MEI|1|1|U|707
5MEI|1|1|G|708
5MEI|1|1|A|709
5MEI|1|1|A|710
5MEI|1|1|A|711
5MEI|1|1|G|712
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AJ
- 60S ribosomal protein L36-A
- Chain t
- 60S ribosomal protein L13-A
- Chain y
- 60S ribosomal protein L18-A
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