HL_5MEI_035

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

5MEI|1|1|U|1606, 5MEI|1|1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0926

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5MEI|1|1|G|1599
5MEI|1|1|U|1600
5MEI|1|1|U|1601
5MEI|1|1|A|1602
5MEI|1|1|A|1603
5MEI|1|1|G|1604
5MEI|1|1|A|1605
5MEI|1|1|U|1606
5MEI|1|1|U|1607
5MEI|1|1|C|1608

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 8

60S ribosomal protein L25

Chain AH

60S ribosomal protein L34-A

Chain z

60S ribosomal protein L19-A