HL_5MEI_054

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5MEI|1|1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_054 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.0813

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

5MEI|1|1|C|2616
5MEI|1|1|U|2617
5MEI|1|1|G|2618
5MEI|1|1|G|2619
5MEI|1|1|G|2620
5MEI|1|1|G|2621
5MEI|1|1|C|2622
5MEI|1|1|G|2623
5MEI|1|1|G|2624

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L29

Chain r

60S ribosomal protein L10