HL_5MEI_117

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5MEI|1|A|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_117 not in the Motif Atlas

Geometric match to HL_6CZR_082

Geometric discrepancy: 0.384

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

5MEI|1|A|C|230
5MEI|1|A|U|231
5MEI|1|A|U|232
5MEI|1|A|C|233
5MEI|1|A|G|234
5MEI|1|A|G|235

Current chains

Chain A

18S ribosomal RNA

Nearby chains