HL_5MEI_124

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

5MEI|1|A|A|452, 5MEI|1|A|U|454, 5MEI|1|A|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_124 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1654

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

5MEI|1|A|U|450
5MEI|1|A|A|451
5MEI|1|A|A|452
5MEI|1|A|U|453
5MEI|1|A|U|454
5MEI|1|A|C|455
5MEI|1|A|A|456

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain Z

40S ribosomal protein S24-A