HL_5MEI_126
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_126 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.0949
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MEI|1|A|A|520
5MEI|1|A|A|521
5MEI|1|A|U|522
5MEI|1|A|G|523
5MEI|1|A|U|524
5MEI|1|A|A|525
5MEI|1|A|A|526
5MEI|1|A|A|527
5MEI|1|A|U|528
5MEI|1|A|A|529
5MEI|1|A|C|530
5MEI|1|A|C|531
5MEI|1|A|U|532
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4-A
- Chain K
- 40S ribosomal protein S9-A
- Chain Z
- 40S ribosomal protein S24-A
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