HL_5MEI_128

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5MEI|1|A|U|718, 5MEI|1|A|U|719, 5MEI|1|A|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|A|G|703
5MEI|1|A|C|704
5MEI|1|A|U|705
5MEI|1|A|A|706
5MEI|1|A|A|707
5MEI|1|A|C|708
5MEI|1|A|C|709
5MEI|1|A|U|710
5MEI|1|A|U|711
5MEI|1|A|G|712
5MEI|1|A|A|713
5MEI|1|A|G|714
5MEI|1|A|U|715
5MEI|1|A|C|716
5MEI|1|A|C|717
5MEI|1|A|U|718
5MEI|1|A|U|719
5MEI|1|A|G|720
5MEI|1|A|U|721
5MEI|1|A|G|722
5MEI|1|A|G|723
5MEI|1|A|C|724
5MEI|1|A|U|725
5MEI|1|A|C|726
5MEI|1|A|U|727
5MEI|1|A|U|728
5MEI|1|A|G|729
5MEI|1|A|G|730
5MEI|1|A|C|731
5MEI|1|A|G|732
5MEI|1|A|A|733
5MEI|1|A|A|734
5MEI|1|A|C|735

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A