HL_5MEI_142

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_142 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.528

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

5MEI|1|A|C|1359
5MEI|1|A|A|1360
5MEI|1|A|U|1361
5MEI|1|A|U|1362
5MEI|1|A|U|1363
5MEI|1|A|G|1364

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain R

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S19-A