HL_5MEI_171

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

5MEI|1|AR|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_171 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.1959

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5MEI|1|AR|C|1023
5MEI|1|AR|G|1024
5MEI|1|AR|A|1025
5MEI|1|AR|A|1026
5MEI|1|AR|A|1027
5MEI|1|AR|U|1028
5MEI|1|AR|G|1029

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CM

60S ribosomal protein L11-B

Chain c5

40S ribosomal protein S15

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Suppressor protein Stm1 - Mol B