HL_5MEI_187

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCACCUUUGC

Length

10 nucleotides

Bulged bases

5MEI|1|AR|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_187 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.313

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5MEI|1|AR|G|1758
5MEI|1|AR|C|1759
5MEI|1|AR|A|1760
5MEI|1|AR|C|1761
5MEI|1|AR|C|1762
5MEI|1|AR|U|1763
5MEI|1|AR|U|1764
5MEI|1|AR|U|1765
5MEI|1|AR|G|1766
5MEI|1|AR|C|1767

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain CW

60S ribosomal protein L22-A