HL_5MEI_205

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_205 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.0705

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5MEI|1|AR|A|2673
5MEI|1|AR|A|2674
5MEI|1|AR|C|2675
5MEI|1|AR|A|2676
5MEI|1|AR|G|2677
5MEI|1|AR|A|2678
5MEI|1|AR|A|2679
5MEI|1|AR|A|2680
5MEI|1|AR|U|2681

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CM

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Suppressor protein Stm1 - Mol B