HL_5MEI_219

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

5MEI|1|AR|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_219 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.0844

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

5MEI|1|AR|G|3303
5MEI|1|AR|U|3304
5MEI|1|AR|A|3305
5MEI|1|AR|U|3306
5MEI|1|AR|A|3307
5MEI|1|AR|C|3308
5MEI|1|AR|G|3309
5MEI|1|AR|A|3310
5MEI|1|AR|C|3311

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CR

60S ribosomal protein L17-A