HL_5MEI_225

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

5MEI|1|AT|U|125, 5MEI|1|AT|U|127, 5MEI|1|AT|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_225 not in the Motif Atlas

Geometric match to HL_5TBW_076

Geometric discrepancy: 0.2064

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5MEI|1|AT|G|124
5MEI|1|AT|U|125
5MEI|1|AT|A|126
5MEI|1|AT|U|127
5MEI|1|AT|U|128
5MEI|1|AT|C|129

Current chains

Chain AT

5.8S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA