HL_5MEI_231

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGGGCCCAUUCGGGUCUUG

Length

20 nucleotides

Bulged bases

5MEI|1|6|G|488, 5MEI|1|6|C|489, 5MEI|1|6|U|493, 5MEI|1|6|U|494, 5MEI|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|6|C|484
5MEI|1|6|A|485
5MEI|1|6|G|486
5MEI|1|6|G|487
5MEI|1|6|G|488
5MEI|1|6|C|489
5MEI|1|6|C|490
5MEI|1|6|C|491
5MEI|1|6|A|492
5MEI|1|6|U|493
5MEI|1|6|U|494
5MEI|1|6|C|495
5MEI|1|6|G|496
5MEI|1|6|G|497
5MEI|1|6|G|498
5MEI|1|6|U|499
5MEI|1|6|C|500
5MEI|1|6|U|501
5MEI|1|6|U|502
5MEI|1|6|G|503

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A