HL_5MEI_233

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_233 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.1443

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|6|C|827
5MEI|1|6|U|828
5MEI|1|6|A|829
5MEI|1|6|U|830
5MEI|1|6|U|831
5MEI|1|6|U|832
5MEI|1|6|U|833
5MEI|1|6|G|834
5MEI|1|6|U|835
5MEI|1|6|U|836
5MEI|1|6|G|837
5MEI|1|6|G|838
5MEI|1|6|U|839
5MEI|1|6|U|840
5MEI|1|6|U|841
5MEI|1|6|C|842
5MEI|1|6|U|843
5MEI|1|6|A|844
5MEI|1|6|G|845

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A