HL_5MEI_238
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUCGAAAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 5MEI|1|AR|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MEI_238 not in the Motif Atlas
- Geometric match to HL_8KAL_008
- Geometric discrepancy: 0.3358
- The information below is about HL_8KAL_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5MEI|1|AR|G|1021
5MEI|1|AR|U|1022
5MEI|1|AR|C|1023
5MEI|1|AR|G|1024
5MEI|1|AR|A|1025
5MEI|1|AR|A|1026
5MEI|1|AR|A|1027
5MEI|1|AR|U|1028
5MEI|1|AR|G|1029
5MEI|1|AR|A|1030
5MEI|1|AR|C|1031
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CM
- 60S ribosomal protein L11-B
- Chain c5
- 40S ribosomal protein S15
- Chain sM
- Suppressor protein STM1,Suppressor protein STM1,Suppressor protein Stm1 - Mol B
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