HL_5MEI_244

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

5MEI|1|AR|U|3195, 5MEI|1|AR|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_244 not in the Motif Atlas

Homologous match to HL_8P9A_179

Geometric discrepancy: 0.1759

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65256.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5MEI|1|AR|C|3193
5MEI|1|AR|C|3194
5MEI|1|AR|U|3195
5MEI|1|AR|U|3196
5MEI|1|AR|G|3197
5MEI|1|AR|U|3198
5MEI|1|AR|G|3199

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CO

60S ribosomal protein L14-A

Chain CQ

60S ribosomal protein L16-A