HL_5MEI_251

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

5MEI|1|A|U|779, 5MEI|1|A|U|781, 5MEI|1|A|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MEI_251 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.504

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5MEI|1|A|C|777
5MEI|1|A|G|778
5MEI|1|A|U|779
5MEI|1|A|A|780
5MEI|1|A|U|781
5MEI|1|A|U|782
5MEI|1|A|G|783

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain Z

40S ribosomal protein S24-A