3D structure

PDB id
5MGP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
5MGP|1|A|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5MGP_003 not in the Motif Atlas
Homologous match to HL_5J7L_136
Geometric discrepancy: 0.0748
The information below is about HL_5J7L_136
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82710.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

5MGP|1|A|G|123
5MGP|1|A|G|124
5MGP|1|A|A|125
5MGP|1|A|A|126
5MGP|1|A|A|127
5MGP|1|A|C|128

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23

Coloring options:


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