HL_5MGP_034

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5MGP|1|A|G|1452, 5MGP|1|A|A|1453, 5MGP|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_034 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.2042

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

5MGP|1|A|C|1451
5MGP|1|A|G|1452
5MGP|1|A|A|1453
5MGP|1|A|C|1454
5MGP|1|A|G|1455
5MGP|1|A|G|1456
5MGP|1|A|U|1457
5MGP|1|A|U|1458
5MGP|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17