HL_5MGP_053

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5MGP|1|A|A|2268, 5MGP|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0823

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5MGP|1|A|C|2264
5MGP|1|A|U|2265
5MGP|1|A|A|2266
5MGP|1|A|A|2267
5MGP|1|A|A|2268
5MGP|1|A|G|2269
5MGP|1|A|A|2270
5MGP|1|A|G|2271
5MGP|1|A|U|2272
5MGP|1|A|A|2273
5MGP|1|A|A|2274
5MGP|1|A|C|2275
5MGP|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27