HL_5MGP_061

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_061 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.1182

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MGP|1|A|C|2551
5MGP|1|A|U|2552
5MGP|1|A|G|2553
5MGP|1|A|U|2554
5MGP|1|A|U|2555
5MGP|1|A|C|2556
5MGP|1|A|G|2557

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain z

Peptide chain release factor 2