HL_5MGP_065

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5MGP|1|A|G|2751, 5MGP|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5MGP|1|A|C|2745
5MGP|1|A|U|2746
5MGP|1|A|G|2747
5MGP|1|A|A|2748
5MGP|1|A|A|2749
5MGP|1|A|A|2750
5MGP|1|A|G|2751
5MGP|1|A|C|2752
5MGP|1|A|A|2753
5MGP|1|A|U|2754
5MGP|1|A|C|2755
5MGP|1|A|U|2756
5MGP|1|A|A|2757
5MGP|1|A|A|2758
5MGP|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13