HL_5MGP_078

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0888

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5MGP|1|a|A|320
5MGP|1|a|A|321
5MGP|1|a|C|322
5MGP|1|a|U|323
5MGP|1|a|G|324
5MGP|1|a|A|325
5MGP|1|a|G|326
5MGP|1|a|A|327
5MGP|1|a|C|328
5MGP|1|a|A|329
5MGP|1|a|C|330
5MGP|1|a|G|331
5MGP|1|a|G|332
5MGP|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20