HL_5MGP_105

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

5MGP|1|A|U|1174, 5MGP|1|A|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MGP_105 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3695

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5MGP|1|A|G|1168
5MGP|1|A|A|1169
5MGP|1|A|C|1170
5MGP|1|A|G|1171
5MGP|1|A|C|1172
5MGP|1|A|U|1173
5MGP|1|A|U|1174
5MGP|1|A|A|1175
5MGP|1|A|U|1176
5MGP|1|A|G|1177
5MGP|1|A|C|1178
5MGP|1|A|G|1179
5MGP|1|A|U|1180
5MGP|1|A|U|1181

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L21