HL_5ML7_001

3D structure

PDB id

5ML7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF L1-STALK FRAGMENT OF 23S rRNA FROM HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCUAG

Length

6 nucleotides

Bulged bases

5ML7|1|A|C|2189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ML7_001 not in the Motif Atlas

Geometric match to HL_5ML7_002

Geometric discrepancy: 0.1868

The information below is about HL_5ML7_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5ML7|1|A|C|2187
5ML7|1|A|G|2188
5ML7|1|A|C|2189
5ML7|1|A|U|2190
5ML7|1|A|A|2191
5ML7|1|A|G|2192

Current chains

Chain A

23S ribosomal RNA

Nearby chains