HL_5MLC_001
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUUAAUCGA
- Length
- 10 nucleotides
- Bulged bases
- 5MLC|1|A|A|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MLC_001 not in the Motif Atlas
- Geometric match to HL_4GXY_003
- Geometric discrepancy: 0.3184
- The information below is about HL_4GXY_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_97725.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5MLC|1|A|U|58
5MLC|1|A|A|59
5MLC|1|A|U|60
5MLC|1|A|U|61
5MLC|1|A|A|62
5MLC|1|A|A|63
5MLC|1|A|U|64
5MLC|1|A|C|65
5MLC|1|A|G|66
5MLC|1|A|A|67
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 4
- 50S ribosomal protein L34, chloroplastic
- Chain V
- 50S ribosomal protein L23, chloroplastic
- Chain W
- 50S ribosomal protein L24, chloroplastic
- Chain Z
- 50S ribosomal protein L29, chloroplastic
Coloring options: