HL_5MLC_012

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCACGUGGAAUC

Length

13 nucleotides

Bulged bases

5MLC|1|A|G|398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.166

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5MLC|1|A|G|393
5MLC|1|A|G|394
5MLC|1|A|C|395
5MLC|1|A|A|396
5MLC|1|A|C|397
5MLC|1|A|G|398
5MLC|1|A|U|399
5MLC|1|A|G|400
5MLC|1|A|G|401
5MLC|1|A|A|402
5MLC|1|A|A|403
5MLC|1|A|U|404
5MLC|1|A|C|405

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain N

50S ribosomal protein L15, chloroplastic

Chain Y

50S ribosomal protein L28, chloroplastic