HL_5MLC_017
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGUUGAAGAA
- Length
- 10 nucleotides
- Bulged bases
- 5MLC|1|A|A|584
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MLC_017 not in the Motif Atlas
- Geometric match to HL_4WF9_018
- Geometric discrepancy: 0.1821
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5MLC|1|A|U|576
5MLC|1|A|G|577
5MLC|1|A|U|578
5MLC|1|A|U|579
5MLC|1|A|G|580
5MLC|1|A|A|581
5MLC|1|A|A|582
5MLC|1|A|G|583
5MLC|1|A|A|584
5MLC|1|A|A|585
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 2
- 50S ribosomal protein L32, chloroplastic
- Chain E
- 50S ribosomal protein L3, chloroplastic
- Chain N
- 50S ribosomal protein L15, chloroplastic
- Chain S
- 50S ribosomal protein L20, chloroplastic
- Chain T
- 50S ribosomal protein L21, chloroplastic
Coloring options: