HL_5MLC_028
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAACAGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MLC_028 not in the Motif Atlas
- Homologous match to HL_7A0S_027
- Geometric discrepancy: 0.2021
- The information below is about HL_7A0S_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5MLC|1|A|G|1006
5MLC|1|A|A|1007
5MLC|1|A|A|1008
5MLC|1|A|A|1009
5MLC|1|A|C|1010
5MLC|1|A|A|1011
5MLC|1|A|G|1012
5MLC|1|A|C|1013
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 8
- PSRP6, chloroplastic
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain S
- 50S ribosomal protein L20, chloroplastic
- Chain T
- 50S ribosomal protein L21, chloroplastic
Coloring options: