HL_5MLC_035

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAAUAUUC

Length

10 nucleotides

Bulged bases

5MLC|1|A|U|1417, 5MLC|1|A|U|1418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_035 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.3276

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5MLC|1|A|G|1410
5MLC|1|A|U|1411
5MLC|1|A|G|1412
5MLC|1|A|A|1413
5MLC|1|A|A|1414
5MLC|1|A|U|1415
5MLC|1|A|A|1416
5MLC|1|A|U|1417
5MLC|1|A|U|1418
5MLC|1|A|C|1419

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 7

PSRP5alpha, chloroplastic

Chain V

50S ribosomal protein L23, chloroplastic