HL_5MLC_047

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_047 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3397

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5MLC|1|A|G|1880
5MLC|1|A|A|1881
5MLC|1|A|U|1882
5MLC|1|A|G|1883
5MLC|1|A|A|1884
5MLC|1|A|C|1885

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 3

50S ribosomal protein L33, chloroplastic

Chain N

50S ribosomal protein L15, chloroplastic