HL_5MLC_055
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MLC_055 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.1182
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
5MLC|1|A|U|2341
5MLC|1|A|G|2342
5MLC|1|A|C|2343
5MLC|1|A|A|2344
5MLC|1|A|A|2345
5MLC|1|A|A|2346
5MLC|1|A|G|2347
5MLC|1|A|G|2348
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain G
- 50S ribosomal protein L5, chloroplastic
- Chain O
- 50S ribosomal protein L16, chloroplastic
- Chain X
- 50S ribosomal protein L27, chloroplastic
Coloring options: