HL_5MLC_056

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCACCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_056 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1402

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5MLC|1|A|C|2372
5MLC|1|A|C|2373
5MLC|1|A|C|2374
5MLC|1|A|A|2375
5MLC|1|A|C|2376
5MLC|1|A|C|2377
5MLC|1|A|C|2378
5MLC|1|A|G|2379

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 5

50S ribosomal protein L35, chloroplastic

Chain N

50S ribosomal protein L15, chloroplastic

Chain X

50S ribosomal protein L27, chloroplastic