HL_5MLC_059

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_059 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1735

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5MLC|1|A|A|2488
5MLC|1|A|G|2489
5MLC|1|A|U|2490
5MLC|1|A|U|2491
5MLC|1|A|C|2492
5MLC|1|A|A|2493
5MLC|1|A|C|2494
5MLC|1|A|A|2495
5MLC|1|A|U|2496

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 6

50S ribosomal protein L36, chloroplastic

Chain O

50S ribosomal protein L16, chloroplastic