HL_5MLC_067
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGAGGUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5MLC_067 not in the Motif Atlas
- Geometric match to HL_7LYF_001
- Geometric discrepancy: 0.3505
- The information below is about HL_7LYF_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5MLC|1|B|G|86
5MLC|1|B|G|87
5MLC|1|B|G|88
5MLC|1|B|A|89
5MLC|1|B|G|90
5MLC|1|B|G|91
5MLC|1|B|U|92
5MLC|1|B|C|93
Current chains
- Chain B
- 5S ribosomal RNA, chloroplastic
Nearby chains
- Chain 8
- PSRP6, chloroplastic
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S ribosomal protein L16, chloroplastic
Coloring options: