HL_5MLC_069

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_069 not in the Motif Atlas

Geometric match to HL_4LFB_028

Geometric discrepancy: 0.1183

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5MLC|1|C|A|57
5MLC|1|C|G|58
5MLC|1|C|U|59
5MLC|1|C|G|60
5MLC|1|C|A|61
5MLC|1|C|U|62

Current chains

Chain C

4.8S ribosomal RNA, chloroplastic

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain R

50S ribosomal protein L19, chloroplastic