HL_5MLC_073

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACGGAGAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MLC_073 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2495

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5MLC|1|A|G|2321
5MLC|1|A|A|2322
5MLC|1|A|C|2323
5MLC|1|A|G|2324
5MLC|1|A|G|2325
5MLC|1|A|A|2326
5MLC|1|A|G|2327
5MLC|1|A|A|2328
5MLC|1|A|U|2329

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain G

50S ribosomal protein L5, chloroplastic