HL_5MMI_010

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUAG

Length

5 nucleotides

Bulged bases

5MMI|1|A|U|330, 5MMI|1|A|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_010 not in the Motif Atlas

Homologous match to HL_5J7L_143

Geometric discrepancy: 0.1097

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5MMI|1|A|C|328
5MMI|1|A|C|329
5MMI|1|A|U|330
5MMI|1|A|A|331
5MMI|1|A|G|332

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

plastid ribosomal protein uL4c

Chain V

plastid ribosomal protein uL24c