5MMI Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5MMI_001 | 1/A/66:73 | No text annotation | homologous HL_4WF9_001 HL_08550.2 | |
| HL_5MMI_002 | 1/A/86:94 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.2 | |
| HL_5MMI_003 | 1/A/121:126 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_5MMI_073 | 1/A/129:132 | Mini UNCG | geometric HL_1ZBH_001 HL_12626.2 | |
| HL_5MMI_004 | 1/A/142:152 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_5MMI_005 | 1/A/179:186 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_5MMI_006 | 1/A/210:215 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_5MMI_007 | 1/A/231:237 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_5MMI_009 | 1/A/315:321 | Mini UNCG | geometric HL_5T16_002 HL_12626.2 | |
| HL_5MMI_010 | 1/A/328:332 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_5MMI_011 | 1/A/336:344 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_5MMI_076 | 1/A/394:404 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_5MMI_013 | 1/A/422:429 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_5MMI_014 | 1/A/474:479 | GNRA | homologous HL_7RQB_015 NA | |
| HL_5MMI_015 | 1/A/499:504 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5MMI_016 | 1/A/553:561 | No text annotation | ||
| HL_5MMI_017 | 1/A/576:585 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_5MMI_018 | 1/A/621:629 | No text annotation | ||
| HL_5MMI_019 | 1/A/641:646 | GNRA | homologous HL_5J7L_152 NA | |
| HL_5MMI_020 | 1/A/653:659 | No text annotation | ||
| HL_5MMI_021 | 1/A/723:730 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5MMI_022 | 1/A/755:764 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_5MMI_023 | 1/A/790:796 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_5MMI_024 | 1/A/837:842 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_5MMI_027 | 1/A/983:990 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5MMI_028 | 1/A/1006:1013 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
| HL_5MMI_031 | 1/A/1195:1202 | No text annotation | geometric HL_6UFG_001 HL_17440.1 | |
| HL_5MMI_032 | 1/A/1243:1248 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5MMI_033 | 1/A/1302:1310 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.3 | |
| HL_5MMI_034 | 1/A/1345:1351 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_5MMI_035 | 1/A/1384:1389 | GNRA | homologous HL_5J7L_167 NA | |
| HL_5MMI_036 | 1/A/1410:1419 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_5MMI_037 | 1/A/1470:1481 | No text annotation | ||
| HL_5MMI_039 | 1/A/1529:1537 | No text annotation | ||
| HL_5MMI_040 | 1/A/1567:1572 | UNCG | homologous HL_5J7L_171 NA | |
| HL_5MMI_041 | 1/A/1599:1602 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_5MMI_042 | 1/A/1648:1655 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5MMI_043 | 1/A/1666:1672 | GNRA | homologous HL_5J7L_174 NA | |
| HL_5MMI_044 | 1/A/1727:1732 | UNCG | homologous HL_5J7L_175 NA | |
| HL_5MMI_046 | 1/A/1762:1766 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_5MMI_047 | 1/A/1787:1797 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_5MMI_048 | 1/A/1816:1821 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5MMI_049 | 1/A/1880:1885 | No text annotation | homologous HL_4WF9_045 NA | |
| HL_5MMI_050 | 1/A/1924:1934 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5MMI_051 | 1/A/1963:1971 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_5MMI_052 | 1/A/2041:2050 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5MMI_054 | 1/A/2222:2233 | No text annotation | ||
| HL_5MMI_056 | 1/A/2281:2293 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5MMI_077 | 1/A/2321:2329 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_5MMI_058 | 1/A/2341:2348 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_5MMI_059 | 1/A/2372:2379 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.2 | |
| HL_5MMI_060 | 1/A/2391:2396 | GNRA | homologous HL_4WF9_054 HL_34789.4 | |
| HL_5MMI_061 | 1/A/2421:2430 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5MMI_062 | 1/A/2488:2496 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_5MMI_063 | 1/A/2544:2553 | tRNA anticodon loop | geometric HL_3W3S_002 HL_81376.3 | |
| HL_5MMI_064 | 1/A/2568:2574 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5MMI_065 | 1/A/2611:2616 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5MMI_066 | 1/A/2675:2680 | GNRA | homologous HL_5J7L_197 NA | |
| HL_5MMI_067 | 1/A/2718:2723 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_5MMI_068 | 1/A/2763:2777 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5MMI_075 | 1/B/36:49 | No text annotation | geometric HL_1MJI_004 HL_97756.3 | |
| HL_5MMI_069 | 1/B/39:45 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_5MMI_070 | 1/B/87:92 | GNRA | homologous HL_7A0S_070 HL_34789.4 | |
| HL_5MMI_071 | 1/W/15:23 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_5MMI_072 | 1/W/60:65 | GNRA | geometric HL_7RQB_020 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5MMI_008 | GNRA with extra cWW | ||
| HL_5MMI_012 | No text annotation | ||
| HL_5MMI_025 | Mini UNCG | ||
| HL_5MMI_026 | No text annotation | ||
| HL_5MMI_029 | No text annotation | ||
| HL_5MMI_030 | GNRA wlth tandem sheared | ||
| HL_5MMI_038 | No text annotation | ||
| HL_5MMI_045 | No text annotation | ||
| HL_5MMI_053 | No text annotation | ||
| HL_5MMI_055 | No text annotation | ||
| HL_5MMI_074 | No text annotation | ||
| HL_5MMI_057 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5MMI_001 | 1/A/35:36, 1/A/454:456 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5MMI_002 | 1/A/42:43, 1/A/446:448 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_5MMI_117 | 1/A/55:75, 1/A/108:112 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_5MMI_003 | 1/A/80:84, 1/A/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5MMI_004 | 1/A/136:138, 1/A/156:160 | No text annotation | geometric IL_6DME_003 IL_75527.2 | |
| IL_5MMI_005 | 1/A/168:169, 1/A/197:199 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_5MMI_006 | 1/A/173:179, 1/A/186:193 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_62167.3 | |
| IL_5MMI_007 | 1/A/223:230, 1/A/238:244 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.3 | |
| IL_5MMI_008 | 1/A/278:280, 1/A/375:379 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_5MMI_011 | 1/A/292:296, 1/A/363:366 | UAA/GAN variation | geometric IL_7RQB_060 NA | |
| IL_5MMI_012 | 1/A/298:300, 1/A/359:361 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_01003.4 | |
| IL_5MMI_013 | 1/A/303:305, 1/A/352:356 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5MMI_014 | 1/A/312:314, 1/A/322:324 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_5MMI_016 | 1/A/547:550, 1/A/564:567 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_5MMI_017 | 1/A/574:576, 1/A/585:587 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.3 | |
| IL_5MMI_018 | 1/A/616:620, 1/A/630:634 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_5MMI_019 | 1/A/683:685, 1/A/817:819 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_01003.4 | |
| IL_5MMI_020 | 1/A/685:689, 1/A/810:817 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_5MMI_021 | 1/A/700:702, 1/A/782:784 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_01003.4 | |
| IL_5MMI_022 | 1/A/708:709, 1/A/774:776 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_5MMI_023 | 1/A/713:714, 1/A/739:741 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_5MMI_024 | 1/A/714:718, 1/A/735:739 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_5MMI_025 | 1/A/749:751, 1/A/768:769 | Major groove platform | homologous IL_4WF9_026 IL_48076.8 | |
| IL_5MMI_026 | 1/A/786:788, 1/A/798:802 | Multiple bulged bases | geometric IL_7A0S_021 IL_89509.1 | |
| IL_5MMI_027 | 1/A/848:850, 1/A/967:970 | No text annotation | geometric IL_8GLP_064 IL_16315.2 | |
| IL_5MMI_028 | 1/A/866:872, 1/A/924:930 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_5MMI_029 | 1/A/872:873, 1/A/922:924 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_5MMI_030 | 1/A/874:878, 1/A/918:921 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5MMI_034 | 1/A/1022:1024, 1/A/1186:1187 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5MMI_035 | 1/A/1026:1030, 1/A/1180:1184 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_5MMI_036 | 1/A/1032:1039, 1/A/1177:1178 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_11411.1 | |
| IL_5MMI_037 | 1/A/1039:1041, 1/A/1176:1177 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_5MMI_038 | 1/A/1046:1052, 1/A/1167:1171 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_5MMI_039 | 1/A/1052:1058, 1/A/1152:1167 | No text annotation | homologous IL_7A0S_037 IL_50715.4 | |
| IL_5MMI_040 | 1/A/1059:1062, 1/A/1149:1151 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5MMI_126 | 1/A/1070:1079, 1/A/1136:1141 | No text annotation | ||
| IL_5MMI_045 | 1/A/1217:1219, 1/A/1268:1271 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.5 | |
| IL_5MMI_046 | 1/A/1224:1229, 1/A/1259:1263 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_5MMI_047 | 1/A/1229:1236, 1/A/1255:1259 | Kink-turn | geometric IL_3U4M_004 IL_90775.2 | |
| IL_5MMI_048 | 1/A/1236:1237, 1/A/1253:1255 | Single bulged U | geometric IL_6UFG_004 IL_97561.5 | |
| IL_5MMI_049 | 1/A/1240:1242, 1/A/1249:1250 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5MMI_050 | 1/A/1283:1290, 1/A/2025:2031 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5MMI_051 | 1/A/1331:1334, 1/A/1639:1640 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_74641.2 | |
| IL_5MMI_052 | 1/A/1340:1344, 1/A/1352:1354 | C-loop | homologous IL_7A0S_047 IL_06671.1 | |
| IL_5MMI_053 | 1/A/1372:1376, 1/A/1397:1401 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_5MMI_054 | 1/A/1378:1382, 1/A/1391:1395 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_05821.1 | |
| IL_5MMI_055 | 1/A/1430:1432, 1/A/1627:1629 | No text annotation | homologous IL_4WF9_053 NA | |
| IL_5MMI_119 | 1/A/1430:1433, 1/A/1625:1629 | No text annotation | ||
| IL_5MMI_058 | 1/A/1440:1442, 1/A/1611:1615 | No text annotation | ||
| IL_5MMI_059 | 1/A/1453:1456, 1/A/1591:1595 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_5MMI_060 | 1/A/1458:1461, 1/A/1585:1589 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5MMI_061 | 1/A/1486:1490, 1/A/1554:1559 | No text annotation | ||
| IL_5MMI_121 | 1/A/1494:1498, 1/A/1547:1550 | No text annotation | ||
| IL_5MMI_122 | 1/A/1560:1563, 1/A/1576:1580 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_5MMI_064 | 1/A/1687:1692, 1/A/2018:2020 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_5MMI_065 | 1/A/1699:1701, 1/A/2009:2011 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_5MMI_066 | 1/A/1702:1705, 1/A/2007:2008 | Major groove platform; stack outside cWW | geometric IL_7A0S_061 IL_74641.2 | |
| IL_5MMI_123 | 1/A/1702:1710, 1/A/2004:2008 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_5MMI_067 | 1/A/1705:1710, 1/A/2004:2007 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_5MMI_068 | 1/A/1722:1727, 1/A/1732:1738 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_5MMI_069 | 1/A/1780:1781, 1/A/1994:1996 | Single bulged A | homologous IL_4WF9_068 IL_14190.2 | |
| IL_5MMI_070 | 1/A/1808:1814, 1/A/1823:1831 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5MMI_071 | 1/A/1847:1850, 1/A/1916:1917 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_5MMI_072 | 1/A/1851:1852, 1/A/1912:1915 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5MMI_073 | 1/A/1856:1859, 1/A/1907:1908 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_5MMI_074 | 1/A/1861:1865, 1/A/1901:1905 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5MMI_075 | 1/A/1866:1869, 1/A/1897:1900 | Double sheared | geometric IL_4KZD_002 IL_58355.2 | |
| IL_5MMI_076 | 1/A/1874:1877, 1/A/1888:1892 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_5MMI_077 | 1/A/1947:1948, 1/A/1978:1981 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_5MMI_078 | 1/A/1948:1959, 1/A/1975:1978 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_5MMI_079 | 1/A/2064:2066, 1/A/2634:2635 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_5MMI_080 | 1/A/2068:2071, 1/A/2628:2632 | No text annotation | ||
| IL_5MMI_081 | 1/A/2081:2083, 1/A/2459:2460 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5MMI_082 | 1/A/2084:2085, 1/A/2455:2458 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5MMI_083 | 1/A/2095:2098, 1/A/2252:2256 | tSH-tHW | geometric IL_7RQB_011 NA | |
| IL_5MMI_084 | 1/A/2108:2110, 1/A/2207:2209 | No text annotation | geometric IL_2ZNI_001 NA | |
| IL_5MMI_089 | 1/A/2218:2220, 1/A/2235:2236 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_5MMI_090 | 1/A/2314:2315, 1/A/2335:2338 | Major groove platform; stack outside cWW | geometric IL_7A0S_046 IL_74641.2 | |
| IL_5MMI_091 | 1/A/2367:2370, 1/A/2381:2384 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_5MMI_092 | 1/A/2418:2420, 1/A/2431:2432 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_5MMI_093 | 1/A/2471:2472, 1/A/2513:2515 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_5MMI_094 | 1/A/2474:2476, 1/A/2510:2511 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_5MMI_095 | 1/A/2476:2478, 1/A/2506:2510 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_5MMI_096 | 1/A/2483:2487, 1/A/2497:2501 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_5MMI_097 | 1/A/2527:2529, 1/A/2591:2595 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_5MMI_098 | 1/A/2529:2531, 1/A/2587:2591 | No text annotation | ||
| IL_5MMI_099 | 1/A/2539:2540, 1/A/2557:2560 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.2 | |
| IL_5MMI_100 | 1/A/2608:2609, 1/A/2618:2620 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_5MMI_101 | 1/A/2653:2657, 1/A/2792:2800 | tSH-tHS-tHW | geometric IL_7RQB_102 NA | |
| IL_5MMI_102 | 1/A/2657:2659, 1/A/2790:2792 | Isolated non-canonical cWW pair | geometric IL_6IA2_001 IL_01003.4 | |
| IL_5MMI_103 | 1/A/2669:2675, 1/A/2680:2685 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.6 | |
| IL_5MMI_104 | 1/A/2697:2701, 1/A/2743:2745 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5MMI_105 | 1/A/2704:2708, 1/A/2736:2740 | UAA/GAN variation | geometric IL_4V9F_094 IL_45790.2 | |
| IL_5MMI_106 | 1/A/2712:2713, 1/A/2728:2732 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_5MMI_107 | 1/A/2752:2754, 1/A/2786:2787 | Single bulged C | geometric IL_1S03_006 IL_05642.3 | |
| IL_5MMI_108 | 1/A/2755:2760, 1/A/2780:2785 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_5MMI_109 | 1/B/18:19, 1/B/66:68 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.2 | |
| IL_5MMI_110 | 1/B/24:30, 1/B/56:61 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_5MMI_111 | 1/B/31:32, 1/B/53:55 | Major groove platform | geometric IL_7A0S_084 IL_48076.8 | |
| IL_5MMI_112 | 1/B/36:39, 1/B/45:49 | Symmetric double minor groove platform | geometric IL_1MJI_004 IL_58103.12 | |
| IL_5MMI_113 | 1/B/72:80, 1/B/99:107 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5MMI_114 | 1/W/42:43, 1/W/82:84 | Major groove intercalation | geometric IL_4WF9_106 IL_77710.1 | |
| IL_5MMI_115 | 1/W/47:49, 1/W/75:78 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.2 | |
| IL_5MMI_116 | 1/W/51:56, 1/W/69:73 | tHS double platform | geometric IL_4WF9_108 IL_48489.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5MMI_009 | Single base bend | ||
| IL_5MMI_010 | No text annotation | ||
| IL_5MMI_015 | No text annotation | ||
| IL_5MMI_031 | Isolated cWS basepair | ||
| IL_5MMI_032 | Double sheared | ||
| IL_5MMI_118 | No text annotation | ||
| IL_5MMI_033 | Isolated non-canonical cWW pair | ||
| IL_5MMI_041 | No text annotation | ||
| IL_5MMI_042 | Isolated non-canonical cWW pair | ||
| IL_5MMI_043 | No text annotation | ||
| IL_5MMI_044 | No text annotation | ||
| IL_5MMI_056 | Single stack bend | ||
| IL_5MMI_057 | No text annotation | ||
| IL_5MMI_120 | No text annotation | ||
| IL_5MMI_127 | No text annotation | ||
| IL_5MMI_062 | Double sheared with near cWW | ||
| IL_5MMI_063 | Triple sheared related | ||
| IL_5MMI_085 | Isolated non-canonical cWW pair | ||
| IL_5MMI_124 | Other IL | ||
| IL_5MMI_128 | No text annotation | ||
| IL_5MMI_129 | No text annotation | ||
| IL_5MMI_086 | No text annotation | ||
| IL_5MMI_125 | Kink-turn | ||
| IL_5MMI_087 | Kink-turn related | ||
| IL_5MMI_130 | Kink-turn | ||
| IL_5MMI_088 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5MMI_017 | 1/A/23:30, 1/A/486:493, 1/A/520:527 | No text annotation | ||
| J3_5MMI_018 | 1/A/31:34, 1/A/457:473, 1/A/480:485 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_5MMI_001 | 1/A/55:66, 1/A/73:75, 1/A/108:112 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_5MMI_002 | 1/A/254:258, 1/A/269:276, 1/A/381:382 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5MMI_019 | 1/A/307:311, 1/A/325:334, 1/A/346:350 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_5MMI_003 | 1/A/694:700, 1/A/784:786, 1/A/802:805 | No text annotation | homologous J3_4WF9_002 J3_46658.1 | |
| J3_5MMI_004 | 1/A/709:711, 1/A/743:747, 1/A/771:774 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5MMI_020 | 1/A/856:861, 1/A/935:938, 1/A/958:961 | No text annotation | ||
| J3_5MMI_007 | 1/A/1319:1324, 1/A/1661:1663, 1/A/1675:1678 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_5MMI_008 | 1/A/1326:1330, 1/A/1641:1647, 1/A/1656:1659 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_5MMI_009 | 1/A/1365:1371, 1/A/1402:1406, 1/A/1423:1424 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5MMI_021 | 1/A/1445:1450, 1/A/1598:1599, 1/A/1602:1608 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_5MMI_010 | 1/A/1500:1502, 1/A/1518:1524, 1/A/1542:1545 | No text annotation | ||
| J3_5MMI_011 | 1/A/2104:2107, 1/A/2210:2214, 1/A/2240:2246 | No text annotation | geometric J3_4V9F_007 J3_86017.1 | |
| J3_5MMI_022 | 1/A/2299:2301, 1/A/2401:2412, 1/A/2438:2444 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_5MMI_012 | 1/A/2312:2314, 1/A/2338:2340, 1/A/2349:2354 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_5MMI_013 | 1/A/2534:2537, 1/A/2562:2564, 1/A/2578:2584 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5MMI_014 | 1/A/2807:2808, 1/W/2:7, 1/W/93:98 | No text annotation | ||
| J3_5MMI_015 | 1/B/12:17, 1/B/69:70, 1/B/109:111 | No text annotation | ||
| J3_5MMI_023 | 1/W/10:11, 1/W/27:40, 1/W/86:90 | No text annotation | ||
| J4_5MMI_001 | 1/A/253:254, 1/A/382:387, 1/A/411:418, 1/A/433:436 | No text annotation | homologous J4_7A0S_001 J4_94698.1 | |
| J4_5MMI_002 | 1/A/307:311, 1/A/325:328, 1/A/332:334, 1/A/346:350 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_5MMI_003 | 1/A/611:614, 1/A/636:640, 1/A/647:650, 1/A/662:667 | No text annotation | ||
| J4_5MMI_004 | 1/A/1291:1297, 1/A/1315:1316, 1/A/1681:1684, 1/A/2023:2024 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_5MMI_005 | 1/A/1331:1335, 1/A/1359:1364, 1/A/1425:1426, 1/A/1633:1640 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_5MMI_006 | 1/A/1334:1335, 1/A/1359:1364, 1/A/1425:1426, 1/A/1633:1639 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_5MMI_007 | 1/A/1465:1466, 1/A/1485:1486, 1/A/1559:1560, 1/A/1580:1581 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_5MMI_008 | 1/A/1782:1786, 1/A/1798:1802, 1/A/1837:1840, 1/A/1989:1993 | No text annotation | homologous J4_4WF9_007 J4_61477.6 | |
| J4_5MMI_009 | 1/A/1843:1845, 1/A/1919:1920, 1/A/1938:1947, 1/A/1981:1986 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5MMI_010 | 1/A/2302:2306, 1/A/2360:2364, 1/A/2387:2389, 1/A/2398:2400 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5MMI_011 | 1/A/2660:2663, 1/A/2691:2693, 1/A/2749:2752, 1/A/2787:2789 | No text annotation | ||
| J5_5MMI_001 | 1/A/46:53, 1/A/114:119, 1/A/128:129, 1/A/132:135, 1/A/161:163 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_5MMI_002 | 1/A/253:258, 1/A/269:276, 1/A/381:387, 1/A/411:418, 1/A/433:436 | No text annotation | ||
| J5_5MMI_003 | 1/A/542:544, 1/A/570:574, 1/A/587:589, 1/A/1282:1283, 1/A/2031:2032 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_5MMI_004 | 1/A/594:599, 1/A/679:682, 1/A/820:823, 1/A/1216:1217, 1/A/1271:1277 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_5MMI_005 | 1/A/1710:1718, 1/A/1742:1743, 1/A/1761:1762, 1/A/1766:1774, 1/A/2002:2004 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_5MMI_008 | 1/A/2071:2077, 1/A/2464:2471, 1/A/2515:2524, 1/A/2598:2605, 1/A/2623:2628 | No text annotation | ||
| J5_5MMI_006 | 1/A/2071:2078, 1/A/2463:2471, 1/A/2515:2524, 1/A/2598:2605, 1/A/2623:2628 | No text annotation | ||
| J5_5MMI_007 | 1/A/2088:2091, 1/A/2260:2263, 1/A/2275:2276, 1/A/2298:2299, 1/A/2444:2452 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_5MMI_001 | 1/A/44:46, 1/A/163:168, 1/A/199:209, 1/A/216:220, 1/A/247:251, 1/A/438:445 | No text annotation | ||
| J6_5MMI_002 | 1/A/2088:2091, 1/A/2260:2263, 1/A/2275:2276, 1/A/2298:2301, 1/A/2401:2412, 1/A/2438:2452 | No text annotation | ||
| J7_5MMI_001 | 1/A/5:15, 1/A/535:542, 1/A/2032:2037, 1/A/2054:2057, 1/A/2642:2647, 1/A/2806:2807, 1/W/98:101 | No text annotation | ||
| J7_5MMI_002 | 1/A/828:833, 1/A/846:847, 1/A/971:974, 1/A/999:1004, 1/A/1015:1019, 1/A/1190:1191, 1/A/1206:1211 | No text annotation | ||
| J10_5MMI_001 | 1/A/5:15, 1/A/535:544, 1/A/570:574, 1/A/587:589, 1/A/1282:1283, 1/A/2031:2037, 1/A/2054:2057, 1/A/2642:2647, 1/A/2806:2807, 1/W/98:101 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5MMI_005 | No text annotation | ||
| J3_5MMI_006 | No text annotation | ||
| J3_5MMI_016 | No text annotation |
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