HL_5MMI_024

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGAGG

Length

6 nucleotides

Bulged bases

5MMI|1|A|U|838, 5MMI|1|A|G|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_024 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.0972

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

5MMI|1|A|U|837
5MMI|1|A|U|838
5MMI|1|A|G|839
5MMI|1|A|A|840
5MMI|1|A|G|841
5MMI|1|A|G|842

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

plastid ribosomal protein uL15c

Chain X

plastid ribosomal protein bL27c