HL_5MMI_028

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_028 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1793

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5MMI|1|A|G|1006
5MMI|1|A|A|1007
5MMI|1|A|A|1008
5MMI|1|A|A|1009
5MMI|1|A|C|1010
5MMI|1|A|A|1011
5MMI|1|A|G|1012
5MMI|1|A|C|1013

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein 6, chloroplastic

Chain B

5S ribosomal RNA; 5S rRNA

Chain R

50S ribosomal protein L20, chloroplastic