HL_5MMI_029

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUAGAAGCAG

Length

11 nucleotides

Bulged bases

5MMI|1|A|A|1098

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_029 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.0982

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5MMI|1|A|C|1092
5MMI|1|A|C|1093
5MMI|1|A|U|1094
5MMI|1|A|A|1095
5MMI|1|A|G|1096
5MMI|1|A|A|1097
5MMI|1|A|A|1098
5MMI|1|A|G|1099
5MMI|1|A|C|1100
5MMI|1|A|A|1101
5MMI|1|A|G|1102

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11, chloroplastic