HL_5MMI_034

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCGUC

Length

7 nucleotides

Bulged bases

5MMI|1|A|U|1346, 5MMI|1|A|U|1350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_034 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0737

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

5MMI|1|A|G|1345
5MMI|1|A|U|1346
5MMI|1|A|U|1347
5MMI|1|A|C|1348
5MMI|1|A|G|1349
5MMI|1|A|U|1350
5MMI|1|A|C|1351

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

plastid ribosomal protein bL17c

Chain T

50S ribosomal protein L22, chloroplastic