HL_5MMI_036

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAUAUUC

Length

10 nucleotides

Bulged bases

5MMI|1|A|U|1417, 5MMI|1|A|U|1418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5MMI_036 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.429

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5MMI|1|A|G|1410
5MMI|1|A|U|1411
5MMI|1|A|G|1412
5MMI|1|A|A|1413
5MMI|1|A|A|1414
5MMI|1|A|U|1415
5MMI|1|A|A|1416
5MMI|1|A|U|1417
5MMI|1|A|U|1418
5MMI|1|A|C|1419

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

plastid ribosomal protein cL37, PSRP5

Chain U

50S ribosomal protein L23, chloroplastic